Monday, July 18, 2011

Paul Horton- LAST for sequence alignment

2 ideas.
Replace hash table with suffix array (adoptive seeds), up to 100x speedup.

Add read quality score to alignment penalty.

Available from
Last.cbrc.jp

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Location: Austria Center Vienna (Iakw-austria Center), Bruno-Kreisky-Platz 1, 1220 Wien, Austria

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